BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB009H10SP1|AL426121
(784 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1382 1539 0.0
>3x_Contig1382
Length = 8314
Score = 1539 bits (775), Expect = 0.0
Identities = 780/783 (99%)
Strand = Plus / Minus
Query: 2 ggatgggatcgtctttaagaagtaccgtaacatctcatgatgttgcactgtcttggacat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ggatgggatcgtctttaagaagtaccgtaacatctcatgatgttgcactgtcttggacat 2030
Query: 62 cgataactggaaattcgaaattaatgccatcgacacatcctgccaccatttaggcaaact 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 cgataactggaaattcgaaattaatgccatcgacacatcctgccaccatttaggcaaact 1970
Query: 122 agaacacaagattctaatgaaagatatatagctacttagagtagtagcaggtaactccca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 agaacacaagattctaatgaaagatatatagctacttagagtagtagcaggtaactccca 1910
Query: 182 ccacttctcaaagttgattattgatctgattatggtcagtcctctcttattatcgatctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 ccacttctcaaagttgattattgatctgattatggtcagtcctctcttattatcgatctt 1850
Query: 242 tgttatattatwccccagcatccgtagaagcaaggagaaattatcagcggatatacgatc 301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 tgttatattattccccagcatccgtagaagcaaggagaaattatcagcggatatacgatc 1790
Query: 302 tgcactggacgctggtaaagatacttgcatagacaaagactcaataccagaatcctcacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 tgcactggacgctggtaaagatacttgcatagacaaagactcaataccagaatcctcacc 1730
Query: 362 agcatctatctccttcaaagctctaattacaaagctttcaaacatctctaaagcaaactt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 agcatctatctccttcaaagctctaattacaaagctttcaaacatctctaaagcaaactt 1670
Query: 422 cttatcattcccacacccgtcttttctcgtatwgctgccagataaaaccgaattaccatc 481
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1669 cttatcattcccactcccgtcttttctcgtattgctgccagataaaaccgaattaccatc 1610
Query: 482 ttgatccagaacggtttctgaaaactctaccctccgcctcttcttatcagaaccactgat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 ttgatccagaacggtttctgaaaactctaccctccgcctcttcttatcagaaccactgat 1550
Query: 542 catagcagaactaaggtcagtgcattgtctcttctgtccattctccatagccatcatatt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 catagcagaactaaggtcagtgcattgtctcttctgtccattctccatagccatcatatt 1490
Query: 602 tgcatcacagaaagacaaatcctataattctttctccaataaaaaaacaagaaaagcact 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 tgcatcacagaaagacaaatcctataattctttctccaataaaaaaacaagaaaagcact 1430
Query: 662 gaatcaggaaaacaaggttattcaacaatagaaagatcaggctcgattgcaatatgtcaa 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 gaatcaggaaaacaaggttattcaacaatagaaagatcaggctcgattgcaatatgtcaa 1370
Query: 722 aacacagcgatatggatagtatatagcacttgaatcactgttttgtctcctgtttcacac 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 aacacagcgatatggatagtatatagcacttgaatcactgttttgtctcctgtttcacac 1310
Query: 782 agt 784
|||
Sbjct: 1309 agt 1307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5723
Number of Sequences: 1807
Number of extensions: 5723
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 784
length of database: 10,358,551
effective HSP length: 16
effective length of query: 768
effective length of database: 10,329,639
effective search space: 7933162752
effective search space used: 7933162752
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)